nbiatoolkit
latest
Getting started
National Biomedical Imaging Archive (NBIA)
Installation
Setup
Configuring Logger
Querying API
Collection Methods
Modality Methods
Patient Methods
Studies Methods
Series Methods
Downloading API
Download Series
Project Info
Contributing
CHANGELOG
Code of Conduct
API Reference
nbiatoolkit
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
_
__enter__() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
__exit__() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
__repr__() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
__str__() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.NBIA_ENDPOINTS method)
(nbiatoolkit.OAuth2 method)
(nbiatoolkit.utils.NBIA_BASE_URLS method)
(nbiatoolkit.utils.NBIA_ENDPOINTS method)
(nbiatoolkit.utils.nbia_endpoints.NBIA_BASE_URLS method)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS method)
__version__ (in module nbiatoolkit)
(in module nbiatoolkit.nbia)
_add_extra_args() (in module nbiatoolkit.nbia_cli)
_format() (nbiatoolkit.NBIA_ENDPOINTS method)
(nbiatoolkit.utils.NBIA_BASE_URLS method)
(nbiatoolkit.utils.NBIA_ENDPOINTS method)
(nbiatoolkit.utils.nbia_endpoints.NBIA_BASE_URLS method)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS method)
_get_return() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
_initialize_parser() (in module nbiatoolkit.nbia_cli)
_refresh_access_token() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
_truncateUID() (in module nbiatoolkit.dicomsort)
(in module nbiatoolkit.dicomsort.helper_functions)
A
access_token (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.auth.OAuth2 property)
(nbiatoolkit.OAuth2 attribute)
(nbiatoolkit.OAuth2 property)
api_headers (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.auth.OAuth2 property)
(nbiatoolkit.OAuth2 attribute)
(nbiatoolkit.OAuth2 property)
B
base_url (nbiatoolkit.nbia.NBIAClient attribute)
(nbiatoolkit.nbia.NBIAClient property)
(nbiatoolkit.NBIAClient attribute)
(nbiatoolkit.NBIAClient property)
C
calculateMD5() (in module nbiatoolkit.utils.md5)
camel_case_tag() (in module nbiatoolkit.dicomtags.tags)
clean_html() (in module nbiatoolkit.utils)
(in module nbiatoolkit.utils.parsers)
cli_wrapper() (in module nbiatoolkit.nbia_cli)
client_id (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.OAuth2 attribute)
conv_response_list() (in module nbiatoolkit.utils)
(in module nbiatoolkit.utils.conv_response_list)
convert_element_to_int() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
convert_int_to_element() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
convertDateFormat() (in module nbiatoolkit.utils)
(in module nbiatoolkit.utils.parsers)
convertMillis() (in module nbiatoolkit.utils)
(in module nbiatoolkit.utils.parsers)
D
DATAFRAME (nbiatoolkit.utils.nbia_endpoints.ReturnType attribute)
(nbiatoolkit.utils.ReturnType attribute)
decrypt_credentials() (in module nbiatoolkit.auth)
DICOMSorter (class in nbiatoolkit.dicomsort)
(class in nbiatoolkit.dicomsort.dicomsort)
DICOMSorter_cli() (in module nbiatoolkit.nbia_cli)
done_event (in module nbiatoolkit.nbia_cli)
DOWNLOAD_SERIES (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
downloadSeries() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
downloadSingleSeries() (in module nbiatoolkit)
(in module nbiatoolkit.nbia)
downloadSingleSeries_cli() (in module nbiatoolkit.nbia_cli)
E
element_VR_lookup() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
encrypt_credentials() (in module nbiatoolkit.auth)
expiry_time (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.OAuth2 attribute)
extract_ROI_info() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
F
fernet_key (nbiatoolkit.auth.OAuth2 property)
(nbiatoolkit.OAuth2 property)
G
generateFileDatasetFromTags() (in module nbiatoolkit.dicomtags.tags)
generateFilePathFromDICOMAttributes() (in module nbiatoolkit.dicomsort)
(in module nbiatoolkit.dicomsort.dicomsort)
generateFilePathFromDICOMTags() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
GET_BODY_PART_PATIENT_COUNT (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_COLLECTION_DESCRIPTIONS (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_COLLECTION_PATIENT_COUNT (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_COLLECTIONS (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
get_dicom_files() (in module nbiatoolkit.dicomsort.dicomsort)
GET_DICOM_TAGS (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_MODALITY_PATIENT_COUNT (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_MODALITY_VALUES (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_NEW_PATIENTS_IN_COLLECTION (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_PATIENT_BY_COLLECTION_AND_MODALITY (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_PATIENTS (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_SERIES (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_SERIES_METADATA (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_STUDIES (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
GET_UPDATED_SERIES (nbiatoolkit.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.NBIA_ENDPOINTS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_ENDPOINTS attribute)
getBodyPartCounts() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
getBodyPartCounts_cli() (in module nbiatoolkit.nbia_cli)
getCollectionDescriptions() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getCollectionPatientCount() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getCollections() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getCollections_cli() (in module nbiatoolkit.nbia_cli)
getDICOMTags() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
getModalityValues() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getNewPatients() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getNewPatients_cli() (in module nbiatoolkit.nbia_cli)
getNewSeries() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
getNewSeries_cli() (in module nbiatoolkit.nbia_cli)
getPatients() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getPatients_cli() (in module nbiatoolkit.nbia_cli)
getPatientsByCollectionAndModality() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getReferencedFrameOfReferenceSequence() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
getReferencedSeriesUIDS() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
getRefSeriesUIDs() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
getResults_cli() (in module nbiatoolkit.nbia_cli)
getSequenceElement() (in module nbiatoolkit.dicomtags.tags)
getSeries() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getSeries_cli() (in module nbiatoolkit.nbia_cli)
getSeriesMetadata() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
getSeriesModality() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
getStudies() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
,
[1]
getStudies_cli() (in module nbiatoolkit.nbia_cli)
getToken() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
H
headers (nbiatoolkit.nbia.NBIAClient attribute)
(nbiatoolkit.nbia.NBIAClient property)
(nbiatoolkit.NBIAClient attribute)
(nbiatoolkit.NBIAClient property)
I
is_logged_out() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
is_token_expired() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
L
LIST (nbiatoolkit.utils.nbia_endpoints.ReturnType attribute)
(nbiatoolkit.utils.ReturnType attribute)
logger (nbiatoolkit.nbia.NBIAClient attribute)
(nbiatoolkit.nbia.NBIAClient property)
(nbiatoolkit.NBIAClient attribute)
(nbiatoolkit.NBIAClient property)
logout() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
LOGOUT_URL (nbiatoolkit.utils.NBIA_BASE_URLS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_BASE_URLS attribute)
LOOKUP_TAG() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
M
MD5HashMismatchError
module
nbiatoolkit
nbiatoolkit.auth
nbiatoolkit.dicomsort
nbiatoolkit.dicomsort.dicomsort
nbiatoolkit.dicomsort.helper_functions
nbiatoolkit.dicomtags
nbiatoolkit.dicomtags.tags
nbiatoolkit.logger
nbiatoolkit.logger.logger
nbiatoolkit.nbia
nbiatoolkit.nbia_cli
nbiatoolkit.utils
nbiatoolkit.utils.conv_response_list
nbiatoolkit.utils.md5
nbiatoolkit.utils.nbia_endpoints
nbiatoolkit.utils.parsers
N
NBIA (nbiatoolkit.utils.NBIA_BASE_URLS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_BASE_URLS attribute)
NBIA_BASE_URLS (class in nbiatoolkit.utils)
(class in nbiatoolkit.utils.nbia_endpoints)
NBIA_ENDPOINTS (class in nbiatoolkit)
(class in nbiatoolkit.utils)
(class in nbiatoolkit.utils.nbia_endpoints)
NBIAClient (class in nbiatoolkit)
(class in nbiatoolkit.nbia)
nbiatoolkit
module
nbiatoolkit.auth
module
nbiatoolkit.dicomsort
module
nbiatoolkit.dicomsort.dicomsort
module
nbiatoolkit.dicomsort.helper_functions
module
nbiatoolkit.dicomtags
module
nbiatoolkit.dicomtags.tags
module
nbiatoolkit.logger
module
nbiatoolkit.logger.logger
module
nbiatoolkit.nbia
module
nbiatoolkit.nbia_cli
module
nbiatoolkit.utils
module
nbiatoolkit.utils.conv_response_list
module
nbiatoolkit.utils.md5
module
nbiatoolkit.utils.nbia_endpoints
module
nbiatoolkit.utils.parsers
module
NLST (nbiatoolkit.utils.NBIA_BASE_URLS attribute)
(nbiatoolkit.utils.nbia_endpoints.NBIA_BASE_URLS attribute)
O
OAuth2 (class in nbiatoolkit)
(class in nbiatoolkit.auth)
OAuth_client (nbiatoolkit.nbia.NBIAClient attribute)
(nbiatoolkit.nbia.NBIAClient property)
(nbiatoolkit.NBIAClient attribute)
(nbiatoolkit.NBIAClient property)
output (in module nbiatoolkit.nbia_cli)
P
parse_response() (in module nbiatoolkit.utils)
(in module nbiatoolkit.utils.parsers)
parseDICOMKeysFromFormat() (in module nbiatoolkit.dicomsort)
(in module nbiatoolkit.dicomsort.helper_functions)
parsePARAMS() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
password (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.OAuth2 attribute)
Q
query (in module nbiatoolkit.nbia_cli)
query_api() (nbiatoolkit.nbia.NBIAClient method)
(nbiatoolkit.NBIAClient method)
R
read_in_dicom_file() (in module nbiatoolkit.dicomsort.dicomsort)
refresh_expiration_time (nbiatoolkit.auth.OAuth2 property)
(nbiatoolkit.OAuth2 property)
refresh_expiry (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.OAuth2 attribute)
refresh_token (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.OAuth2 attribute)
refresh_token_or_request_new() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
request_new_access_token() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
return_type (nbiatoolkit.nbia.NBIAClient attribute)
(nbiatoolkit.nbia.NBIAClient property)
(nbiatoolkit.NBIAClient attribute)
(nbiatoolkit.NBIAClient property)
ReturnType (class in nbiatoolkit.utils)
(class in nbiatoolkit.utils.nbia_endpoints)
S
sanitizeFileName() (in module nbiatoolkit.dicomsort)
(in module nbiatoolkit.dicomsort.helper_functions)
scope (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.OAuth2 attribute)
set_token_data() (nbiatoolkit.auth.OAuth2 method)
(nbiatoolkit.OAuth2 method)
setup_logger() (in module nbiatoolkit)
(in module nbiatoolkit.logger)
,
[1]
(in module nbiatoolkit.logger.logger)
sortDICOMFiles() (nbiatoolkit.dicomsort.dicomsort.DICOMSorter method)
(nbiatoolkit.dicomsort.DICOMSorter method)
sortSingleDICOMFile() (in module nbiatoolkit.dicomsort.dicomsort)
subsetSeriesTags() (in module nbiatoolkit.dicomtags)
(in module nbiatoolkit.dicomtags.tags)
T
token_expiration_time (nbiatoolkit.auth.OAuth2 property)
(nbiatoolkit.OAuth2 property)
token_scope (nbiatoolkit.auth.OAuth2 property)
(nbiatoolkit.OAuth2 property)
U
username (nbiatoolkit.auth.OAuth2 attribute)
(nbiatoolkit.OAuth2 attribute)
V
validateMD5() (in module nbiatoolkit.utils)
(in module nbiatoolkit.utils.md5)
version() (in module nbiatoolkit)
(in module nbiatoolkit.nbia_cli)
W
writeResultsToFile() (in module nbiatoolkit.nbia_cli)
Read the Docs
v: latest
Versions
latest
stable
Downloads
On Read the Docs
Project Home
Builds